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agc 002  (Alomone Labs)


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    Structured Review

    Alomone Labs agc 002
    Agc 002, supplied by Alomone Labs, used in various techniques. Bioz Stars score: 94/100, based on 29 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/agc+002/Anti-NMDAR2A+Antibody/pmc12834171-18-7-4
    Average 94 stars, based on 29 article reviews
    agc 002 - by Bioz Stars, 2026-09
    94/100 stars

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    Alomone Labs epitope
    ( A ) Representative images of cultured hippocampal neurons (DIV 14 - 15) stimulated with BDNF (50 ng/ml for 10 or 30 min), as indicated. Neurons were then live-immunoassayed for GluN2A using an antibody against <t>an</t> <t>extracellular</t> <t>epitope</t> in the GluN2A N-terminus, fixed, and further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95- and vGluT1-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per density of excitatory synapses (number of puncta PSD-95–vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the control and are the means ± SEM of 43-45 cells per condition, from at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p <0.001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.
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    Alomone Labs anti-nmdar2a antibody
    ( A ) Representative images of cultured hippocampal neurons (DIV 14 - 15) stimulated with BDNF (50 ng/ml for 10 or 30 min), as indicated. Neurons were then live-immunoassayed for GluN2A using an antibody against <t>an</t> <t>extracellular</t> <t>epitope</t> in the GluN2A N-terminus, fixed, and further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95- and vGluT1-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per density of excitatory synapses (number of puncta PSD-95–vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the control and are the means ± SEM of 43-45 cells per condition, from at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p <0.001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.
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    Alomone Labs rabbit anti glun2a antibody
    Relative mRNA expression levels of Grin1 , <t>Grin2a</t> , and Grin2b in the hippocampus of adult male (A) and female (B) Grin2b +/+ and Grin2b ⁺ /Δ mice, as determined by RT-qPCR. Data were normalized to the corresponding mean Grin2b +/+ value and are presented as mean ± SEM and analyzed using Student’s t-test to compare the expression in Grin2b ⁺ /Δ versus Grin2b +/+ mice; asterisks (*) indicate statistically significant differences. (C) Representative chromatograms of Sanger sequencing of PCR amplicons spanning the region of the frameshift mutation (gray box) in male and female Grin2b ⁺ /Δ mice and the plasmid DNA mixture of Grin2b ⁺: Grin2b Δ at a 1:1 ratio; yellow arrowheads indicate two of the five analyzed nucleotides. (D) The relative expression levels of Grin2b mRNA show comparable expression of wild-type and mutant alleles. Data are presented as mean ± SEM and were analyzed using one-way ANOVA (no significant differences were found).
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    Image Search Results


    ( A ) Representative images of cultured hippocampal neurons (DIV 14 - 15) stimulated with BDNF (50 ng/ml for 10 or 30 min), as indicated. Neurons were then live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95- and vGluT1-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per density of excitatory synapses (number of puncta PSD-95–vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the control and are the means ± SEM of 43-45 cells per condition, from at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p <0.001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: ( A ) Representative images of cultured hippocampal neurons (DIV 14 - 15) stimulated with BDNF (50 ng/ml for 10 or 30 min), as indicated. Neurons were then live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95- and vGluT1-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per density of excitatory synapses (number of puncta PSD-95–vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the control and are the means ± SEM of 43-45 cells per condition, from at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p <0.001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Cell Culture, Control

    ( A ) Representative images of hippocampal synaptoneurosomes (prepared from adult Sprague-Dawley rats 6-8 weeks old) incubated with BDNF (50 ng/mL). Synaptoneurosomes were immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus and immunoassayed for vGluT1, PSD-95. Merge scale bar, 10 μm. Insert scale bar, 0.5 um. Images illustrated in ( A ) were analyzed for the GluN2A integrated density ( B ) and area ( C ). Data are the means ± SEM of 779 - 840 synaptoneurosomes per condition, in at least three independent experiments performed in different preparations. ****p < 0.0001, by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: ( A ) Representative images of hippocampal synaptoneurosomes (prepared from adult Sprague-Dawley rats 6-8 weeks old) incubated with BDNF (50 ng/mL). Synaptoneurosomes were immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus and immunoassayed for vGluT1, PSD-95. Merge scale bar, 10 μm. Insert scale bar, 0.5 um. Images illustrated in ( A ) were analyzed for the GluN2A integrated density ( B ) and area ( C ). Data are the means ± SEM of 779 - 840 synaptoneurosomes per condition, in at least three independent experiments performed in different preparations. ****p < 0.0001, by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Incubation

    ( A ) Representative images of hippocampal neurons (DIV 14 - 15) pre-incubated with CHX (50 µg/ml) or vehicle (DMSO; 1:1000 dilution for 40 min) and then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min), as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95- and vGluT1-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95–vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of DMSO control and are the means ± SEM of 58 - 60 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p < 0.01, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: ( A ) Representative images of hippocampal neurons (DIV 14 - 15) pre-incubated with CHX (50 µg/ml) or vehicle (DMSO; 1:1000 dilution for 40 min) and then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min), as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95- and vGluT1-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95–vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of DMSO control and are the means ± SEM of 58 - 60 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p < 0.01, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Incubation, Control

    (A) Representative images of rat hippocampal neurons transfected with short hairpin control (sh-Ctrl) or with a hnRNPK-targeted short hairpin (sh-hnRNPK) RNA at DIV 12. At DIV 15, cultures were then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min) as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95 and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of sh-Ctrl and are the means ± SEM of 44 - 47 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: (A) Representative images of rat hippocampal neurons transfected with short hairpin control (sh-Ctrl) or with a hnRNPK-targeted short hairpin (sh-hnRNPK) RNA at DIV 12. At DIV 15, cultures were then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min) as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95 and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of sh-Ctrl and are the means ± SEM of 44 - 47 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Transfection, Control

    ( A ) Representative images of rat hippocampal neurons transfected with short hairpin control (sh-Ctrl) or with a Pyk2-targeted short hairpin (sh-Pyk2) RNA at DIV 12. At DIV 15, cultures were then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min) as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95 and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of sh-Ctrl and are the means ± SEM of 44 - 47 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: ( A ) Representative images of rat hippocampal neurons transfected with short hairpin control (sh-Ctrl) or with a Pyk2-targeted short hairpin (sh-Pyk2) RNA at DIV 12. At DIV 15, cultures were then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min) as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95 and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of sh-Ctrl and are the means ± SEM of 44 - 47 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05, **p < 0.01, ***p < 0.001, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Transfection, Control

    (A) Representative images of hippocampal neurons that were transfected with wild-type (WT) or phospho-mutant, kinase-deficient Pyk2 (Y402F) at DIV 12, and at DIV 15 were maintained under control conditions or stimulated with BDNF (50 ng/ml) for 10 min, live-immunostained for GluN2A (using an antibody against an extracellular epitope in the GluN2A N terminus), fixed and permeabilized, and further immunostained for Flag (transfection marker) and MAP2. Scale bar, 5 µm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the empty vector control (Flag) and are means ± SEM of 45 - 34 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05; **p < 0.01, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: (A) Representative images of hippocampal neurons that were transfected with wild-type (WT) or phospho-mutant, kinase-deficient Pyk2 (Y402F) at DIV 12, and at DIV 15 were maintained under control conditions or stimulated with BDNF (50 ng/ml) for 10 min, live-immunostained for GluN2A (using an antibody against an extracellular epitope in the GluN2A N terminus), fixed and permeabilized, and further immunostained for Flag (transfection marker) and MAP2. Scale bar, 5 µm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the empty vector control (Flag) and are means ± SEM of 45 - 34 cells per condition, in at least three independent experiments performed in different preparations. *p < 0.05; **p < 0.01, ****p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Transfection, Mutagenesis, Control, Marker, Plasmid Preparation

    (A) Representative images of hippocampal neurons (DIV 14 - 15) pre-incubated with GÖ 6983 (100 nM) or vehicle (DMSO; 1:1000 dilution for 40 min) and then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min), as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the DMSO control and are the means ± SEM of 67 - 70 cells per condition, in at least three independent experiments performed in different preparations. **p < 0.01, ***p < 0.001 ** **p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: (A) Representative images of hippocampal neurons (DIV 14 - 15) pre-incubated with GÖ 6983 (100 nM) or vehicle (DMSO; 1:1000 dilution for 40 min) and then either maintained under the same conditions or stimulated with BDNF (50 ng/ml for 10 min), as indicated. Neurons were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus, fixed, and then further immunoassayed for PSD-95, vGluT1, and MAP2. Scale bar, 5 μm. Images illustrated in ( A ) were analyzed for the total number ( B ), area ( C ), and intensity ( D ) of surface GluN2A puncta per dendritic length. Synaptic (PSD-95-colocalized) surface GluN2A number ( E ), area ( F ), and intensity ( G ) of puncta per µm of excitatory synapses (number of puncta PSD-95-vGluT1 colocalized per µm), were also analyzed. Data are normalized to the mean of the DMSO control and are the means ± SEM of 67 - 70 cells per condition, in at least three independent experiments performed in different preparations. **p < 0.01, ***p < 0.001 ** **p < 0.0001 by Kruskal-Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Incubation, Control

    ( A ) Experimental design for the lithium-pilocarpine model of Status Epilepticus. ( B ) Representative images of hippocampal synaptoneurosomes (prepared from adult rats treated with saline, saline and ANA-12, Pilocarpine or Pilocarpine and ANA-12). Synaptoneurosomes were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus and immunoassayed for vGluT1 and PSD-95. Merge scale bar, 10 μm. Insert scale bar, 0.5 µm. Images illustrated in ( B ) were analyzed for the GluN2A integrated density ( C ) and GluN2A area ( D ). Data are the means ± SEM of 1592 - 2008 synaptoneurosomes per condition, from at least four animals for each experimental condition. *p < 0.05, **p < 0.01, ****p < 0.0001, as determined by Kruskal Wallis’s test and Dunn’s multiple comparisons test.

    Journal: bioRxiv

    Article Title: BDNF-TrkB signaling promotes synaptic GluN2A-NMDA receptor expression and network hyperexcitability in cultured hippocampal neurons and during status epilepticus

    doi: 10.1101/2025.10.13.682007

    Figure Lengend Snippet: ( A ) Experimental design for the lithium-pilocarpine model of Status Epilepticus. ( B ) Representative images of hippocampal synaptoneurosomes (prepared from adult rats treated with saline, saline and ANA-12, Pilocarpine or Pilocarpine and ANA-12). Synaptoneurosomes were live-immunoassayed for GluN2A using an antibody against an extracellular epitope in the GluN2A N-terminus and immunoassayed for vGluT1 and PSD-95. Merge scale bar, 10 μm. Insert scale bar, 0.5 µm. Images illustrated in ( B ) were analyzed for the GluN2A integrated density ( C ) and GluN2A area ( D ). Data are the means ± SEM of 1592 - 2008 synaptoneurosomes per condition, from at least four animals for each experimental condition. *p < 0.05, **p < 0.01, ****p < 0.0001, as determined by Kruskal Wallis’s test and Dunn’s multiple comparisons test.

    Article Snippet: To label surface GluN2A-NMDAR, live neurons (low-density hippocampal cultures) were incubated for 10 min at room temperature with an antibody against an extracellular epitope of the GluN2A N-terminus (1:100; AGC-002, Alomone Labs) diluted in a saline buffer (145 mM NaCl, 5 mM glucose, 10 mM HEPES, 5 mM KCl, 1.8 mM CaCl 2 , 1 mM MgCl 2, [pH 7.3]), as previously described ( ).

    Techniques: Saline

    Relative mRNA expression levels of Grin1 , Grin2a , and Grin2b in the hippocampus of adult male (A) and female (B) Grin2b +/+ and Grin2b ⁺ /Δ mice, as determined by RT-qPCR. Data were normalized to the corresponding mean Grin2b +/+ value and are presented as mean ± SEM and analyzed using Student’s t-test to compare the expression in Grin2b ⁺ /Δ versus Grin2b +/+ mice; asterisks (*) indicate statistically significant differences. (C) Representative chromatograms of Sanger sequencing of PCR amplicons spanning the region of the frameshift mutation (gray box) in male and female Grin2b ⁺ /Δ mice and the plasmid DNA mixture of Grin2b ⁺: Grin2b Δ at a 1:1 ratio; yellow arrowheads indicate two of the five analyzed nucleotides. (D) The relative expression levels of Grin2b mRNA show comparable expression of wild-type and mutant alleles. Data are presented as mean ± SEM and were analyzed using one-way ANOVA (no significant differences were found).

    Journal: bioRxiv

    Article Title: Phenotype of mice carrying an NMDA receptor GluN2B protein-truncating variant associated with intellectual disability

    doi: 10.1101/2025.10.02.680004

    Figure Lengend Snippet: Relative mRNA expression levels of Grin1 , Grin2a , and Grin2b in the hippocampus of adult male (A) and female (B) Grin2b +/+ and Grin2b ⁺ /Δ mice, as determined by RT-qPCR. Data were normalized to the corresponding mean Grin2b +/+ value and are presented as mean ± SEM and analyzed using Student’s t-test to compare the expression in Grin2b ⁺ /Δ versus Grin2b +/+ mice; asterisks (*) indicate statistically significant differences. (C) Representative chromatograms of Sanger sequencing of PCR amplicons spanning the region of the frameshift mutation (gray box) in male and female Grin2b ⁺ /Δ mice and the plasmid DNA mixture of Grin2b ⁺: Grin2b Δ at a 1:1 ratio; yellow arrowheads indicate two of the five analyzed nucleotides. (D) The relative expression levels of Grin2b mRNA show comparable expression of wild-type and mutant alleles. Data are presented as mean ± SEM and were analyzed using one-way ANOVA (no significant differences were found).

    Article Snippet: At DIV 14, surface GluN2A and GluN2B subunits were labeled in primary hippocampal neurons from Grin2b +/+ or Grin2b +/Δ mice by live staining with a rabbit anti-GluN2A antibody (1:250; AGC-002; Alomone) or a rabbit anti-GluN2B (1:250; AGC-003; Alomone), both targeting extracellular epitopes.

    Techniques: Expressing, Quantitative RT-PCR, Sequencing, Mutagenesis, Plasmid Preparation

    (A) Volcano plot of proteomics analysis comparing protein levels in hippocampal tissue from adult Grin2b +/+ and Grin2b ⁺ /Δ mice. The x-axis shows log₂ fold-change (negative: downregulated; positive: upregulated), and the y-axis shows –log₁₀ p-values. The horizontal change of color marks the p = 0.05 significance threshold, and vertical dashed lines indicate a two-fold change. Proteins significantly downregulated in Grin2b ⁺ /Δ mice are shown in blue; significantly upregulated proteins are shown in yellow; non-significant changes are in gray. Statistical significance was determined using a two-sample test (see Methods). (B) Protein abundance levels of GluN1, GluN2A, GluN2B-no-CTD, and GluN2B-CTD in Grin2b +/+ ( 2b +/+ ), Grin2b ⁺ /Δ ( 2b ⁺ /Δ ), and Grin2b ⁺ /L825V ( 2b ⁺ /LV ) mice, normalized to the wild-type Grin2b +/+ reference. Data are presented as mean ± SEM; asterisks (*) indicate statistically significant differences (one-way ANOVA followed by the Dunnett method). (C) Relative CN calculated as the CN of GluN1, GluN2A, and GluN2B subunits in Grin2b +/+ , Grin2b ⁺ /Δ , and Grin2b ⁺ /L825V mice, normalized to the CN of GluN1 subunit in Grin2b +/+ mice. Arrows indicate the reference GluN subunit levels in Grin2b +/+ mice. Data are presented as mean ± SEM; asterisks (*) indicate significant differences in CN between genotypes (one-way ANOVA followed by the Dunnett method). (D) Estimated relative abundance of GluN1/GluN2B diheteromers (1-1-2B-2B), GluN1/GluN2A/GluN2B triheteromers (1-1-2A-2B), and GluN1/GluN2A diheteromers (1-1-2A-2A) in Grin2b +/+ , Grin2b ⁺ /Δ , and Grin2b ⁺ /L825V mice, based on the CN data in (C) and calculation methods described Methods. Dotted lines indicate total NMDAR content.

    Journal: bioRxiv

    Article Title: Phenotype of mice carrying an NMDA receptor GluN2B protein-truncating variant associated with intellectual disability

    doi: 10.1101/2025.10.02.680004

    Figure Lengend Snippet: (A) Volcano plot of proteomics analysis comparing protein levels in hippocampal tissue from adult Grin2b +/+ and Grin2b ⁺ /Δ mice. The x-axis shows log₂ fold-change (negative: downregulated; positive: upregulated), and the y-axis shows –log₁₀ p-values. The horizontal change of color marks the p = 0.05 significance threshold, and vertical dashed lines indicate a two-fold change. Proteins significantly downregulated in Grin2b ⁺ /Δ mice are shown in blue; significantly upregulated proteins are shown in yellow; non-significant changes are in gray. Statistical significance was determined using a two-sample test (see Methods). (B) Protein abundance levels of GluN1, GluN2A, GluN2B-no-CTD, and GluN2B-CTD in Grin2b +/+ ( 2b +/+ ), Grin2b ⁺ /Δ ( 2b ⁺ /Δ ), and Grin2b ⁺ /L825V ( 2b ⁺ /LV ) mice, normalized to the wild-type Grin2b +/+ reference. Data are presented as mean ± SEM; asterisks (*) indicate statistically significant differences (one-way ANOVA followed by the Dunnett method). (C) Relative CN calculated as the CN of GluN1, GluN2A, and GluN2B subunits in Grin2b +/+ , Grin2b ⁺ /Δ , and Grin2b ⁺ /L825V mice, normalized to the CN of GluN1 subunit in Grin2b +/+ mice. Arrows indicate the reference GluN subunit levels in Grin2b +/+ mice. Data are presented as mean ± SEM; asterisks (*) indicate significant differences in CN between genotypes (one-way ANOVA followed by the Dunnett method). (D) Estimated relative abundance of GluN1/GluN2B diheteromers (1-1-2B-2B), GluN1/GluN2A/GluN2B triheteromers (1-1-2A-2B), and GluN1/GluN2A diheteromers (1-1-2A-2A) in Grin2b +/+ , Grin2b ⁺ /Δ , and Grin2b ⁺ /L825V mice, based on the CN data in (C) and calculation methods described Methods. Dotted lines indicate total NMDAR content.

    Article Snippet: At DIV 14, surface GluN2A and GluN2B subunits were labeled in primary hippocampal neurons from Grin2b +/+ or Grin2b +/Δ mice by live staining with a rabbit anti-GluN2A antibody (1:250; AGC-002; Alomone) or a rabbit anti-GluN2B (1:250; AGC-003; Alomone), both targeting extracellular epitopes.

    Techniques: Quantitative Proteomics

    (A) Left: Representative immunofluorescence images showing surface and intracellular expression of GluN2B-GFP subunits in HEK293T cells co-transfected with GluN1 and either wild-type (2B-GFP) or mutant (2B Δ -GFP) constructs. DAPI staining was used as a cell viability marker. Right: Quantification of the normalized surface/intracellular fluorescence ratio in HEK293T cells ( n ≥ 100 cells per group, four independent experiments). (B) Left: Representative images of surface and intracellular expression of GluN2B-GFP or GluN2B Δ -GFP in HEK293T cells also co-transfected with GluN1 and GluN2A (2A). Right: Quantification of the normalized surface/intracellular fluorescence ratio ( n ≥ 180 cells per group, four independent experiments). (C) Left: Representative fluorescence images showing surface and intracellular localization of GluN2A-GFP (2A-GFP) in HEK293T cells also co-transfected with GluN1 and either GluN2B (2B) or GluN2B Δ (2B Δ ). Right: Quantification of the normalized surface/intracellular fluorescence ratio for GluN2A-GFP ( n ≥ 100 cells per group, four independent experiments). (D) Left: Representative images of surface and intracellular immunostaining of GluN2B-GFP and GluN2B Δ -GFP in hippocampal neurons from Grin2b +/+ mice. Yellow outlines indicate neuronal somata used for quantification. Right: Normalized surface/intracellular fluorescence ratios for GluN2B-GFP and GluN2B Δ -GFP in the somata of hippocampal neurons ( n ≥ 20 cells per group, four independent experiments). Data are shown as mean ± SEM. Asterisks (*) indicate statistically significant differences ( p ≤ 0.05, Student’s t-test).

    Journal: bioRxiv

    Article Title: Phenotype of mice carrying an NMDA receptor GluN2B protein-truncating variant associated with intellectual disability

    doi: 10.1101/2025.10.02.680004

    Figure Lengend Snippet: (A) Left: Representative immunofluorescence images showing surface and intracellular expression of GluN2B-GFP subunits in HEK293T cells co-transfected with GluN1 and either wild-type (2B-GFP) or mutant (2B Δ -GFP) constructs. DAPI staining was used as a cell viability marker. Right: Quantification of the normalized surface/intracellular fluorescence ratio in HEK293T cells ( n ≥ 100 cells per group, four independent experiments). (B) Left: Representative images of surface and intracellular expression of GluN2B-GFP or GluN2B Δ -GFP in HEK293T cells also co-transfected with GluN1 and GluN2A (2A). Right: Quantification of the normalized surface/intracellular fluorescence ratio ( n ≥ 180 cells per group, four independent experiments). (C) Left: Representative fluorescence images showing surface and intracellular localization of GluN2A-GFP (2A-GFP) in HEK293T cells also co-transfected with GluN1 and either GluN2B (2B) or GluN2B Δ (2B Δ ). Right: Quantification of the normalized surface/intracellular fluorescence ratio for GluN2A-GFP ( n ≥ 100 cells per group, four independent experiments). (D) Left: Representative images of surface and intracellular immunostaining of GluN2B-GFP and GluN2B Δ -GFP in hippocampal neurons from Grin2b +/+ mice. Yellow outlines indicate neuronal somata used for quantification. Right: Normalized surface/intracellular fluorescence ratios for GluN2B-GFP and GluN2B Δ -GFP in the somata of hippocampal neurons ( n ≥ 20 cells per group, four independent experiments). Data are shown as mean ± SEM. Asterisks (*) indicate statistically significant differences ( p ≤ 0.05, Student’s t-test).

    Article Snippet: At DIV 14, surface GluN2A and GluN2B subunits were labeled in primary hippocampal neurons from Grin2b +/+ or Grin2b +/Δ mice by live staining with a rabbit anti-GluN2A antibody (1:250; AGC-002; Alomone) or a rabbit anti-GluN2B (1:250; AGC-003; Alomone), both targeting extracellular epitopes.

    Techniques: Immunofluorescence, Expressing, Transfection, Mutagenesis, Construct, Staining, Marker, Fluorescence, Immunostaining

    (A) Primary hippocampal microisland cultures stained with β3-tubulin. Representative images show neuronal morphology at 7 DIV (left) and 21 DIV (right). Insets display the same microislands at a lower magnification, with neurons labeled by β3-tubulin (red), astrocytes by glial fibrillary acidic protein (GFAP) (green), and nuclei by DAPI (blue). Scatter plots show the current density distribution in individual hippocampal neurons by DIV. Currents were induced by 100 µM kainate (B) or 100 µM NMDA in the presence of 10 µM glycine (C). Insets show representative whole-cell responses evoked by kainate or NMDA in neurons prepared from Grin2b +/+ (black) or Grin2b +/Δ (red) animals and cultured for 21 DIV. (D) The scatter plot shows the distribution of ifenprodil (3 µM) inhibition of NMDA-evoked currents recorded in individual neurons by DIV. Inset shows the effect of 3 µM ifenprodil on responses to 100 μM NMDA in neurons prepared from Grin2b +/+ (black) or Grin2b +/Δ (red) animals cultured for 21 DIV. Blue lines indicate the expected sum of voltage-dependent and voltage-independent inhibition of diheteromeric GluN1/GluN2B (1-1-2B-2B; 85.3%), and GluN1/GluN2A (1-1-2A-2A; 7.9%), and triheteromeric GluN1/GluN2A/GluN2B (1-1-2A-2B; 31.7%) receptors by 3 µM ifenprodil at -60 mV (with IC 50 values and Hill slopes from ) Asterisks (*) Indicate significant differences with respect to: Gen, genotype; Age, age (DIV); Int, genotype × age interaction. Data were power transformed and tested using ANOVA, followed by pairwise comparisons (LSD method).

    Journal: bioRxiv

    Article Title: Phenotype of mice carrying an NMDA receptor GluN2B protein-truncating variant associated with intellectual disability

    doi: 10.1101/2025.10.02.680004

    Figure Lengend Snippet: (A) Primary hippocampal microisland cultures stained with β3-tubulin. Representative images show neuronal morphology at 7 DIV (left) and 21 DIV (right). Insets display the same microislands at a lower magnification, with neurons labeled by β3-tubulin (red), astrocytes by glial fibrillary acidic protein (GFAP) (green), and nuclei by DAPI (blue). Scatter plots show the current density distribution in individual hippocampal neurons by DIV. Currents were induced by 100 µM kainate (B) or 100 µM NMDA in the presence of 10 µM glycine (C). Insets show representative whole-cell responses evoked by kainate or NMDA in neurons prepared from Grin2b +/+ (black) or Grin2b +/Δ (red) animals and cultured for 21 DIV. (D) The scatter plot shows the distribution of ifenprodil (3 µM) inhibition of NMDA-evoked currents recorded in individual neurons by DIV. Inset shows the effect of 3 µM ifenprodil on responses to 100 μM NMDA in neurons prepared from Grin2b +/+ (black) or Grin2b +/Δ (red) animals cultured for 21 DIV. Blue lines indicate the expected sum of voltage-dependent and voltage-independent inhibition of diheteromeric GluN1/GluN2B (1-1-2B-2B; 85.3%), and GluN1/GluN2A (1-1-2A-2A; 7.9%), and triheteromeric GluN1/GluN2A/GluN2B (1-1-2A-2B; 31.7%) receptors by 3 µM ifenprodil at -60 mV (with IC 50 values and Hill slopes from ) Asterisks (*) Indicate significant differences with respect to: Gen, genotype; Age, age (DIV); Int, genotype × age interaction. Data were power transformed and tested using ANOVA, followed by pairwise comparisons (LSD method).

    Article Snippet: At DIV 14, surface GluN2A and GluN2B subunits were labeled in primary hippocampal neurons from Grin2b +/+ or Grin2b +/Δ mice by live staining with a rabbit anti-GluN2A antibody (1:250; AGC-002; Alomone) or a rabbit anti-GluN2B (1:250; AGC-003; Alomone), both targeting extracellular epitopes.

    Techniques: Staining, Labeling, Cell Culture, Inhibition, Transformation Assay

    (A–B) Scatter plots show the distribution of peak current densities for AMPAR-eEPSCs (A) and NMDAR-eEPSCs (B) recorded from individual Grin2b +/+ (gray) and Grin2b ⁺ /Δ (red) neurons, plotted as a function of DIV. Insets: representative traces from Grin2b +/+ (black) and Grin2b ⁺ /Δ (red) neurons at 8 DIV. (C) Weighted deactivation time constants of NMDAR-eEPSCs plotted by DIV. Inset: scaled NMDAR-eEPSCs from Grin2b +/+ (black) and Grin2b ⁺ /Δ (red) neurons at 8 DIV. (D) Ifenprodil (3 µM) inhibition of NMDAR-eEPSC peak amplitudes plotted by DIV. (C) Weighted deactivation time constants of NMDAR-eEPSCs recorded in the presence of ifenprodil (3 µM) and plotted by DIV. Inset: example traces from Grin2b +/+ (black) and Grin2b ⁺ /Δ (red) neurons recorded at 15 DIV, showing the effect of ifenprodil (gray). The green lines in C, E, and D indicate mean weighted deactivation time constants of NMDAR-eEPSCs recorded from mouse hippocampal pyramidal neurons at -60 mV (C), mean ifenprodil (3 µM) inhibition of NMDAR-eEPSCs at +40 mV(D), and mean weighted deactivation time constants of NMDAR-eEPSCs recorded in the presence of ifenprodil (3 µM) after conditional knockout of GluN2A (Δ2A) or GluN2B (Δ2B) subunits . Asterisks (*) indicate significant differences for: Gen, genotype; Age, age (DIV); Int, genotype × age interaction. Data were power transformed and analyzed by ANOVA followed by pairwise comparisons (LSD method).

    Journal: bioRxiv

    Article Title: Phenotype of mice carrying an NMDA receptor GluN2B protein-truncating variant associated with intellectual disability

    doi: 10.1101/2025.10.02.680004

    Figure Lengend Snippet: (A–B) Scatter plots show the distribution of peak current densities for AMPAR-eEPSCs (A) and NMDAR-eEPSCs (B) recorded from individual Grin2b +/+ (gray) and Grin2b ⁺ /Δ (red) neurons, plotted as a function of DIV. Insets: representative traces from Grin2b +/+ (black) and Grin2b ⁺ /Δ (red) neurons at 8 DIV. (C) Weighted deactivation time constants of NMDAR-eEPSCs plotted by DIV. Inset: scaled NMDAR-eEPSCs from Grin2b +/+ (black) and Grin2b ⁺ /Δ (red) neurons at 8 DIV. (D) Ifenprodil (3 µM) inhibition of NMDAR-eEPSC peak amplitudes plotted by DIV. (C) Weighted deactivation time constants of NMDAR-eEPSCs recorded in the presence of ifenprodil (3 µM) and plotted by DIV. Inset: example traces from Grin2b +/+ (black) and Grin2b ⁺ /Δ (red) neurons recorded at 15 DIV, showing the effect of ifenprodil (gray). The green lines in C, E, and D indicate mean weighted deactivation time constants of NMDAR-eEPSCs recorded from mouse hippocampal pyramidal neurons at -60 mV (C), mean ifenprodil (3 µM) inhibition of NMDAR-eEPSCs at +40 mV(D), and mean weighted deactivation time constants of NMDAR-eEPSCs recorded in the presence of ifenprodil (3 µM) after conditional knockout of GluN2A (Δ2A) or GluN2B (Δ2B) subunits . Asterisks (*) indicate significant differences for: Gen, genotype; Age, age (DIV); Int, genotype × age interaction. Data were power transformed and analyzed by ANOVA followed by pairwise comparisons (LSD method).

    Article Snippet: At DIV 14, surface GluN2A and GluN2B subunits were labeled in primary hippocampal neurons from Grin2b +/+ or Grin2b +/Δ mice by live staining with a rabbit anti-GluN2A antibody (1:250; AGC-002; Alomone) or a rabbit anti-GluN2B (1:250; AGC-003; Alomone), both targeting extracellular epitopes.

    Techniques: Inhibition, Knock-Out, Transformation Assay